csbio (biocs tumbled) RSS

a tumblelog to supplement my real blog

Things too long to tweet and too unimportant to blog go here.

Archive

Jan
5th
2011
Wed
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Sep
20th
2010
Mon
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If you disagree, I’d appreciate either a reference or an implementation; thanks ;)
Sep
13th
2010
Mon
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If you are not paying for it, you’re not the customer; you’re the product being sold.
Jul
30th
2010
Fri
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Furthermore, for many [E. Coli] cells the only source of some proteins is those that are inherited from the mother cell, as mRNA is produced relatively rarely (see the figure). This results in unequal inheritance of the limited number of molecules of a given protein during cell division (8, 10), a phenomenon that also occurs in mammalian cells (11).
Jun
10th
2010
Thu
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Jun
3rd
2010
Thu
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May
31st
2010
Mon
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Newick TreeVisitor cheat sheet

pre_visit_tree(t) — callback called before exploring (sub-)tree t.

post_visit_tree(t) — callback called after exploring (sub-)tree t.

pre_visit_edge(src, bo,le, dst) — callback called before exploring an edge. Here src is the source node and dst is the destination node, bo is the bootstrap support of the edge and le is the length of the edge.

post_visit_edge(src, bo,le, dst) — callback called before exploring an edge. Here src is the source node and dst is the destination node, bo is the bootstrap support of the edge and le is the length of the edge.

visit_leaf(l) — callback called when exploring leaf l.

(From the Newick source)

May
27th
2010
Thu
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May
20th
2010
Thu
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With the addition of a few branches, the STRING/STITCH source code repository is starting to look like a railroad network :-/

With the addition of a few branches, the STRING/STITCH source code repository is starting to look like a railroad network :-/

May
11th
2010
Tue
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We hypothesize that the presence of a rare codon, marked by the synonymous polymorphism, affects the timing of cotranslational folding and insertion of P-gp into the membrane, thereby altering the structure of substrate and inhibitor interaction sites.